# --------------------------------------------
# Portable Batch System
#PBS -N ATLAS_SE             # nom de la requete
#PBS -j o                    # regroupement des stdout et stderr
#PBS -S /usr/bin/ksh         # shell de soumission
#PBS -l memsz_job=1gb        # Limite memoire a 3 Go
#PBS -l cputim_job=2:00:00   # Limite temps
#PBS -q scalaire
 

# --------------------------------------------
set -x

# --------------------------------------------
. /home/p86broc/.atlas_env_mercure_ksh

#---------------------------------------------
date_start=`date`

# --------------------------------------------
cd $TMPDIR

# --------------------------------------------
# Insert your commands between III...III lines and
# precise produced directories to save
# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

descriptor_create ...
nco operators ...

atlas -o dir1 -l ... 
atlas -o dir2 -l ...

directories_produced="dir1 dir2"


# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII

# --------------------------------------------
for directory in $directories_produced ; do
    rm -rf $SCRATCHDIR/$directory
    cp -pR $directory $SCRATCHDIR
done

#---------------------------------------------
# mail
cat << END_MAIL > job_atlas.mail

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Dear $USER,

Your atlas job is finished on supercomputer MERCURE 
at CCRT/CEA center.

The output files are available on mercure.ccc.cea.fr at:
$SCRATCHDIR

Job started: $date_start
Job ended  : `date`

Thank you for reporting any problem to
mailto:Patrick.Brockmann@ipsl.jussieu.fr

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

END_MAIL

mailx -s "MERCURE: atlas job" $USER < job_atlas.mail